Min values: score = 40.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 6082 archaeal, 58616 bacterial, and 87652 eukaryotic tDNAs found, i.e., 152350 tDNAs in total. They are assigned to: V:9252 M:3212 I:7897 L:13365 F:4313 A:11864 T:8897 P:8074 E:7983 D:5950 K:8438 N:5106 Q:5945 H:3397 Y:3967 G:11565 S:11629 R:12040 W:3055 O:0 C:4158 X:2243. They include 132 archaeal, 1259 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1391 tDNAs in total. They are assigned to: V:0 M:0 I:1391 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: QDHE Group 2: TMXIKNR Group 3: AV Group 4: WLSCFY Group 5: G Group 6: P Chronology: MIQAWKTCFNHGVXPYEDRSL ch_aaR_sim: 17.8779 -------------------------------------------------------------------------- Min values: score = 40.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 6081 archaeal, 58611 bacterial, and 87571 eukaryotic tDNAs found, i.e., 152263 tDNAs in total. They are assigned to: V:9252 M:3212 I:7894 L:13354 F:4312 A:11863 T:8892 P:8051 E:7982 D:5944 K:8436 N:5104 Q:5944 H:3389 Y:3967 G:11553 S:11626 R:12035 W:3053 O:0 C:4157 X:2243. They include 132 archaeal, 1259 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1391 tDNAs in total. They are assigned to: V:0 M:0 I:1391 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: YCWFLS Group 2: KITNMXR Group 3: EHDQ Group 4: VA Group 5: G Group 6: P Chronology: MICHVKTWFNQGAXPYEDRSL ch_aaR_sim: 17.8798 -------------------------------------------------------------------------- Min values: score = 41.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 6072 archaeal, 58605 bacterial, and 87503 eukaryotic tDNAs found, i.e., 152180 tDNAs in total. They are assigned to: V:9252 M:3212 I:7893 L:13351 F:4311 A:11853 T:8886 P:8047 E:7978 D:5934 K:8436 N:5103 Q:5943 H:3378 Y:3967 G:11531 S:11625 R:12030 W:3053 O:0 C:4155 X:2242. They include 132 archaeal, 1259 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1391 tDNAs in total. They are assigned to: V:0 M:0 I:1391 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: IMTXNKR Group 2: VA Group 3: EHQD Group 4: SWCYLF Group 5: G Group 6: P Chronology: MIVHWKTCFNQGAXPYEDRSL ch_aaR_sim: 17.8805 -------------------------------------------------------------------------- Min values: score = 41.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 6070 archaeal, 58597 bacterial, and 87417 eukaryotic tDNAs found, i.e., 152084 tDNAs in total. They are assigned to: V:9250 M:3212 I:7893 L:13349 F:4310 A:11849 T:8878 P:8047 E:7976 D:5920 K:8433 N:5102 Q:5937 H:3365 Y:3966 G:11500 S:11623 R:12027 W:3052 O:0 C:4153 X:2242. They include 132 archaeal, 1259 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1391 tDNAs in total. They are assigned to: V:0 M:0 I:1391 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: KTIMXNR Group 2: EDQH Group 3: VA Group 4: SCWFYL Group 5: G Group 6: P Chronology: MIQVCKTWFNHGAXPYEDRSL ch_aaR_sim: 17.8825 -------------------------------------------------------------------------- Min values: score = 42.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 6067 archaeal, 58586 bacterial, and 87346 eukaryotic tDNAs found, i.e., 151999 tDNAs in total. They are assigned to: V:9250 M:3212 I:7892 L:13343 F:4309 A:11847 T:8867 P:8041 E:7970 D:5907 K:8432 N:5100 Q:5934 H:3358 Y:3966 G:11489 S:11619 R:12023 W:3051 O:0 C:4150 X:2239. They include 132 archaeal, 1259 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1391 tDNAs in total. They are assigned to: V:0 M:0 I:1391 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: EHDQ Group 2: TKNRMXI Group 3: VA Group 4: CSWLYF Group 5: G Group 6: P Chronology: MIHVCKTWFNQGAXPYEDRSL ch_aaR_sim: 17.8840 -------------------------------------------------------------------------- Min values: score = 42.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 6063 archaeal, 58575 bacterial, and 87238 eukaryotic tDNAs found, i.e., 151876 tDNAs in total. They are assigned to: V:9249 M:3211 I:7891 L:13341 F:4309 A:11837 T:8847 P:8041 E:7963 D:5876 K:8431 N:5099 Q:5932 H:3343 Y:3963 G:11477 S:11610 R:12020 W:3050 O:0 C:4148 X:2238. They include 132 archaeal, 1259 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1391 tDNAs in total. They are assigned to: V:0 M:0 I:1391 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: YWCLSF Group 2: TRIMXKN Group 3: QDEH Group 4: VA Group 5: G Group 6: P Chronology: MIWQVKTCFNHGAXPYEDRSL ch_aaR_sim: 17.8891 -------------------------------------------------------------------------- Min values: score = 43.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 6062 archaeal, 58565 bacterial, and 87174 eukaryotic tDNAs found, i.e., 151801 tDNAs in total. They are assigned to: V:9247 M:3211 I:7889 L:13340 F:4308 A:11821 T:8843 P:8039 E:7957 D:5870 K:8429 N:5099 Q:5930 H:3332 Y:3963 G:11467 S:11607 R:12018 W:3048 O:0 C:4145 X:2238. They include 132 archaeal, 1259 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1391 tDNAs in total. They are assigned to: V:0 M:0 I:1391 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: IMXTKRN Group 2: WYCSLF Group 3: HQED Group 4: VA Group 5: G Group 6: P Chronology: MIWHVKTCFNQGAXPYEDRSL ch_aaR_sim: 17.8925 -------------------------------------------------------------------------- Min values: score = 43.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 6059 archaeal, 58553 bacterial, and 87107 eukaryotic tDNAs found, i.e., 151719 tDNAs in total. They are assigned to: V:9246 M:3211 I:7889 L:13340 F:4307 A:11814 T:8839 P:8035 E:7952 D:5854 K:8426 N:5097 Q:5927 H:3316 Y:3962 G:11461 S:11602 R:12015 W:3045 O:0 C:4144 X:2237. They include 132 archaeal, 1259 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1391 tDNAs in total. They are assigned to: V:0 M:0 I:1391 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: DEQH Group 2: IRMXTNK Group 3: VA Group 4: SCWLYF Group 5: G Group 6: P Chronology: MIQVCKTWFNHGAXPYEDRSL ch_aaR_sim: 17.8935 -------------------------------------------------------------------------- Min values: score = 44.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 6055 archaeal, 58543 bacterial, and 87006 eukaryotic tDNAs found, i.e., 151604 tDNAs in total. They are assigned to: V:9242 M:3211 I:7886 L:13338 F:4307 A:11809 T:8836 P:8027 E:7949 D:5830 K:8426 N:5097 Q:5921 H:3300 Y:3962 G:11436 S:11596 R:12010 W:3045 O:0 C:4141 X:2235. They include 132 archaeal, 1258 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1390 tDNAs in total. They are assigned to: V:0 M:0 I:1390 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: KMIXTRN Group 2: QHDE Group 3: CYWFSL Group 4: AV Group 5: G Group 6: P Chronology: MIQCAKTWFNHGVXPYEDRSL ch_aaR_sim: 17.8943 -------------------------------------------------------------------------- Min values: score = 44.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 6052 archaeal, 58528 bacterial, and 86907 eukaryotic tDNAs found, i.e., 151487 tDNAs in total. They are assigned to: V:9240 M:3211 I:7883 L:13333 F:4307 A:11795 T:8827 P:8027 E:7934 D:5813 K:8424 N:5095 Q:5914 H:3294 Y:3962 G:11413 S:11590 R:12007 W:3044 O:0 C:4140 X:2234. They include 132 archaeal, 1257 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1389 tDNAs in total. They are assigned to: V:0 M:0 I:1389 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: AV Group 2: INMXTKR Group 3: QEDH Group 4: SLCWYF Group 5: G Group 6: P Chronology: MIAQCKTWFNHGVXPYEDRSL ch_aaR_sim: 17.8920 -------------------------------------------------------------------------- Min values: score = 45.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 6047 archaeal, 58509 bacterial, and 86808 eukaryotic tDNAs found, i.e., 151364 tDNAs in total. They are assigned to: V:9238 M:3209 I:7878 L:13330 F:4307 A:11789 T:8818 P:8022 E:7923 D:5800 K:8423 N:5094 Q:5909 H:3286 Y:3960 G:11388 S:11583 R:11995 W:3043 O:0 C:4135 X:2234. They include 132 archaeal, 1257 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1389 tDNAs in total. They are assigned to: V:0 M:0 I:1389 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: RTIMXNK Group 2: VA Group 3: QEDH Group 4: YCFLSW Group 5: G Group 6: P Chronology: MIVQCKTWFNHGAXPYEDRSL ch_aaR_sim: 17.8944 -------------------------------------------------------------------------- Min values: score = 45.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 6040 archaeal, 58485 bacterial, and 86630 eukaryotic tDNAs found, i.e., 151155 tDNAs in total. They are assigned to: V:9236 M:3207 I:7877 L:13323 F:4307 A:11782 T:8815 P:8012 E:7884 D:5796 K:8423 N:5094 Q:5897 H:3281 Y:3958 G:11351 S:11540 R:11983 W:3041 O:0 C:4133 X:2215. They include 132 archaeal, 1257 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1389 tDNAs in total. They are assigned to: V:0 M:0 I:1389 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: AV Group 2: TIMXKNR Group 3: CSWFLY Group 4: EQHD Group 5: G Group 6: P Chronology: MIACQKTWFNHGVXPYEDRSL ch_aaR_sim: 17.8979 -------------------------------------------------------------------------- Min values: score = 46.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 6034 archaeal, 58465 bacterial, and 86523 eukaryotic tDNAs found, i.e., 151022 tDNAs in total. They are assigned to: V:9236 M:3207 I:7874 L:13322 F:4307 A:11766 T:8810 P:7997 E:7867 D:5780 K:8421 N:5094 Q:5886 H:3274 Y:3957 G:11329 S:11537 R:11971 W:3039 O:0 C:4133 X:2215. They include 132 archaeal, 1256 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1388 tDNAs in total. They are assigned to: V:0 M:0 I:1388 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: LCSWYF Group 2: VA Group 3: MIKXRTN Group 4: HQED Group 5: G Group 6: P Chronology: MICVHKTWFNQGAXPYEDRSL ch_aaR_sim: 17.9061 -------------------------------------------------------------------------- Min values: score = 46.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 6031 archaeal, 58434 bacterial, and 86409 eukaryotic tDNAs found, i.e., 150874 tDNAs in total. They are assigned to: V:9228 M:3205 I:7873 L:13313 F:4307 A:11761 T:8803 P:7994 E:7844 D:5777 K:8421 N:5093 Q:5869 H:3256 Y:3956 G:11314 S:11531 R:11965 W:3037 O:0 C:4127 X:2200. They include 132 archaeal, 1255 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1387 tDNAs in total. They are assigned to: V:0 M:0 I:1387 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: TMXKIRN Group 2: VA Group 3: WSCLYF Group 4: EDQH Group 5: G Group 6: P Chronology: MIVWQKTCFNHGAXPYEDRSL ch_aaR_sim: 17.9081 -------------------------------------------------------------------------- Min values: score = 47.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 6024 archaeal, 58406 bacterial, and 86244 eukaryotic tDNAs found, i.e., 150674 tDNAs in total. They are assigned to: V:9223 M:3203 I:7872 L:13299 F:4305 A:11755 T:8799 P:7988 E:7816 D:5755 K:8419 N:5090 Q:5858 H:3246 Y:3955 G:11282 S:11524 R:11935 W:3027 O:0 C:4123 X:2200. They include 132 archaeal, 1255 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1387 tDNAs in total. They are assigned to: V:0 M:0 I:1387 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: DEQH Group 2: AV Group 3: YCWLFS Group 4: TNMXIKR Group 5: G Group 6: P Chronology: MIQACKTWFNHGVXPYEDRSL ch_aaR_sim: 17.9101 -------------------------------------------------------------------------- Min values: score = 47.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 6018 archaeal, 58367 bacterial, and 86140 eukaryotic tDNAs found, i.e., 150525 tDNAs in total. They are assigned to: V:9222 M:3203 I:7860 L:13286 F:4305 A:11744 T:8795 P:7982 E:7802 D:5747 K:8413 N:5090 Q:5833 H:3242 Y:3953 G:11265 S:11516 R:11927 W:3022 O:0 C:4120 X:2198. They include 132 archaeal, 1255 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1387 tDNAs in total. They are assigned to: V:0 M:0 I:1387 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: RIMTXNK Group 2: VA Group 3: QEDH Group 4: LSYCWF Group 5: G Group 6: P Chronology: MIVQCKTWFNHGAXYPEDRSL ch_aaR_sim: 17.9237 -------------------------------------------------------------------------- Min values: score = 48.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 6014 archaeal, 58327 bacterial, and 86011 eukaryotic tDNAs found, i.e., 150352 tDNAs in total. They are assigned to: V:9213 M:3201 I:7856 L:13275 F:4305 A:11738 T:8789 P:7973 E:7774 D:5744 K:8412 N:5089 Q:5821 H:3234 Y:3952 G:11224 S:11510 R:11915 W:3016 O:0 C:4114 X:2197. They include 132 archaeal, 1255 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1387 tDNAs in total. They are assigned to: V:0 M:0 I:1387 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: VA Group 2: TMXIKNR Group 3: QHED Group 4: WCSLFY Group 5: G Group 6: P Chronology: MIVQWKTCFNHGAXYPEDRSL ch_aaR_sim: 17.9264 -------------------------------------------------------------------------- Min values: score = 48.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 6005 archaeal, 58295 bacterial, and 85899 eukaryotic tDNAs found, i.e., 150199 tDNAs in total. They are assigned to: V:9206 M:3201 I:7852 L:13261 F:4304 A:11734 T:8786 P:7961 E:7753 D:5741 K:8411 N:5087 Q:5810 H:3227 Y:3951 G:11188 S:11501 R:11904 W:3013 O:0 C:4112 X:2196. They include 132 archaeal, 1255 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1387 tDNAs in total. They are assigned to: V:0 M:0 I:1387 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: YWLCSF Group 2: MIXTKNR Group 3: EQDH Group 4: VA Group 5: G Group 6: P Chronology: MIWQVKTCFNHGAXYPEDRSL ch_aaR_sim: 17.9281 -------------------------------------------------------------------------- Min values: score = 49.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 6000 archaeal, 58259 bacterial, and 85785 eukaryotic tDNAs found, i.e., 150044 tDNAs in total. They are assigned to: V:9203 M:3201 I:7848 L:13250 F:4303 A:11728 T:8782 P:7944 E:7739 D:5738 K:8410 N:5087 Q:5804 H:3212 Y:3951 G:11156 S:11499 R:11884 W:3011 O:0 C:4105 X:2189. They include 132 archaeal, 1255 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1387 tDNAs in total. They are assigned to: V:0 M:0 I:1387 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: AV Group 2: TKNMXIR Group 3: EHDQ Group 4: SCYWLF Group 5: G Group 6: P Chronology: MIAHCKTWFNQGVXYPEDRSL ch_aaR_sim: 17.9317 -------------------------------------------------------------------------- Min values: score = 49.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5997 archaeal, 58199 bacterial, and 85619 eukaryotic tDNAs found, i.e., 149815 tDNAs in total. They are assigned to: V:9200 M:3200 I:7844 L:13230 F:4303 A:11720 T:8780 P:7932 E:7686 D:5717 K:8409 N:5086 Q:5767 H:3196 Y:3949 G:11130 S:11494 R:11875 W:3007 O:0 C:4104 X:2186. They include 132 archaeal, 1252 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1384 tDNAs in total. They are assigned to: V:0 M:0 I:1384 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: QEDH Group 2: CFWSLY Group 3: VA Group 4: NITKRMX Group 5: G Group 6: P Chronology: MIQCVKTWFNHGAXYPEDRSL ch_aaR_sim: 17.9335 -------------------------------------------------------------------------- Min values: score = 50.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5988 archaeal, 58145 bacterial, and 85400 eukaryotic tDNAs found, i.e., 149533 tDNAs in total. They are assigned to: V:9155 M:3200 I:7841 L:13199 F:4302 A:11711 T:8774 P:7920 E:7659 D:5713 K:8408 N:5085 Q:5747 H:3153 Y:3941 G:11092 S:11486 R:11861 W:2999 O:0 C:4101 X:2186. They include 132 archaeal, 1251 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1383 tDNAs in total. They are assigned to: V:0 M:0 I:1383 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: AV Group 2: DEHQ Group 3: CYFSLW Group 4: IMXTNKR Group 5: G Group 6: P Chronology: MIAHCKTWFNQGVXYPEDRSL ch_aaR_sim: 17.9369 -------------------------------------------------------------------------- Min values: score = 50.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5981 archaeal, 58095 bacterial, and 85175 eukaryotic tDNAs found, i.e., 149251 tDNAs in total. They are assigned to: V:9147 M:3198 I:7832 L:13179 F:4300 A:11691 T:8765 P:7895 E:7639 D:5699 K:8395 N:5082 Q:5711 H:3135 Y:3934 G:11072 S:11476 R:11838 W:2995 O:0 C:4094 X:2174. They include 132 archaeal, 1250 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1382 tDNAs in total. They are assigned to: V:0 M:0 I:1382 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: TIKMXNR Group 2: QHED Group 3: YSLCWF Group 4: VA Group 5: G Group 6: P Chronology: MIQCVKTWFNHGAXYPEDRSL ch_aaR_sim: 17.9374 -------------------------------------------------------------------------- Min values: score = 51.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5962 archaeal, 58043 bacterial, and 84890 eukaryotic tDNAs found, i.e., 148895 tDNAs in total. They are assigned to: V:9143 M:3196 I:7827 L:13149 F:4296 A:11671 T:8751 P:7882 E:7570 D:5682 K:8381 N:5076 Q:5680 H:3096 Y:3927 G:11061 S:11464 R:11813 W:2982 O:0 C:4086 X:2162. They include 132 archaeal, 1249 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1381 tDNAs in total. They are assigned to: V:0 M:0 I:1381 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: KTINMXR Group 2: CWSLYF Group 3: EDQH Group 4: VA Group 5: G Group 6: P Chronology: MICQVKTWFNHGAYXPEDRSL ch_aaR_sim: 17.9563 -------------------------------------------------------------------------- Min values: score = 51.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5953 archaeal, 57975 bacterial, and 84596 eukaryotic tDNAs found, i.e., 148524 tDNAs in total. They are assigned to: V:9133 M:3195 I:7818 L:13110 F:4294 A:11649 T:8738 P:7863 E:7523 D:5657 K:8363 N:5071 Q:5655 H:3085 Y:3919 G:11027 S:11451 R:11780 W:2972 O:0 C:4076 X:2145. They include 132 archaeal, 1246 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1378 tDNAs in total. They are assigned to: V:0 M:0 I:1378 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: VA Group 2: NKITMXR Group 3: WCYFSL Group 4: EDQH Group 5: G Group 6: P Chronology: MIVWQKTCFNHGAYXPEDRSL ch_aaR_sim: 17.9627 -------------------------------------------------------------------------- Min values: score = 52.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5944 archaeal, 57915 bacterial, and 84031 eukaryotic tDNAs found, i.e., 147890 tDNAs in total. They are assigned to: V:9124 M:3195 I:7783 L:13039 F:4290 A:11626 T:8734 P:7838 E:7390 D:5633 K:8345 N:5067 Q:5623 H:3068 Y:3907 G:10898 S:11440 R:11752 W:2956 O:0 C:4056 X:2126. They include 132 archaeal, 1246 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1378 tDNAs in total. They are assigned to: V:0 M:0 I:1378 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: TIKMXRN Group 2: VA Group 3: CSWLFY Group 4: DHQE Group 5: G Group 6: P Chronology: MIVCHKTWFNQGAYXPEDRSL ch_aaR_sim: 17.9814 -------------------------------------------------------------------------- Min values: score = 52.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5940 archaeal, 57859 bacterial, and 83732 eukaryotic tDNAs found, i.e., 147531 tDNAs in total. They are assigned to: V:9116 M:3192 I:7778 L:13012 F:4287 A:11595 T:8725 P:7817 E:7361 D:5598 K:8326 N:5065 Q:5587 H:3041 Y:3899 G:10882 S:11432 R:11704 W:2950 O:0 C:4053 X:2111. They include 132 archaeal, 1245 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1377 tDNAs in total. They are assigned to: V:0 M:0 I:1377 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: ITKRMXN Group 2: QEHD Group 3: CSLWYF Group 4: VA Group 5: G Group 6: P Chronology: MIQCVKTWFNHGAYXPEDRSL ch_aaR_sim: 17.9845 -------------------------------------------------------------------------- Min values: score = 53.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5903 archaeal, 57744 bacterial, and 83402 eukaryotic tDNAs found, i.e., 147049 tDNAs in total. They are assigned to: V:9099 M:3192 I:7771 L:12968 F:4282 A:11567 T:8717 P:7774 E:7320 D:5579 K:8312 N:5045 Q:5551 H:3016 Y:3890 G:10837 S:11423 R:11642 W:2940 O:0 C:4039 X:2085. They include 132 archaeal, 1244 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1376 tDNAs in total. They are assigned to: V:0 M:0 I:1376 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: AV Group 2: KNIMXTR Group 3: SLCFYW Group 4: QDHE Group 5: G Group 6: P Chronology: MIACQKTWFNHGVYXPEDRSL ch_aaR_sim: 17.9884 -------------------------------------------------------------------------- Min values: score = 53.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5882 archaeal, 57665 bacterial, and 82934 eukaryotic tDNAs found, i.e., 146481 tDNAs in total. They are assigned to: V:9082 M:3190 I:7767 L:12908 F:4279 A:11514 T:8703 P:7729 E:7282 D:5543 K:8296 N:5038 Q:5487 H:2981 Y:3870 G:10809 S:11406 R:11590 W:2922 O:0 C:4028 X:2057. They include 132 archaeal, 1242 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1374 tDNAs in total. They are assigned to: V:0 M:0 I:1374 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: CWFLYS Group 2: NRTMXIK Group 3: VA Group 4: DEQH Group 5: G Group 6: P Chronology: MICVQKTWFNHGAYXPEDRSL ch_aaR_sim: 17.9922 -------------------------------------------------------------------------- Min values: score = 54.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5861 archaeal, 57586 bacterial, and 82426 eukaryotic tDNAs found, i.e., 145873 tDNAs in total. They are assigned to: V:9067 M:3189 I:7759 L:12861 F:4275 A:11447 T:8689 P:7657 E:7179 D:5535 K:8283 N:5028 Q:5434 H:2954 Y:3861 G:10767 S:11391 R:11535 W:2909 O:0 C:4017 X:2036. They include 132 archaeal, 1242 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1374 tDNAs in total. They are assigned to: V:0 M:0 I:1374 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: NKMXIRT Group 2: VA Group 3: QEDH Group 4: SYCWFL Group 5: G Group 6: P Chronology: MIVQCKTWFNHGAXYPEDRSL ch_aaR_sim: 17.9973 -------------------------------------------------------------------------- Min values: score = 54.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5849 archaeal, 57488 bacterial, and 82026 eukaryotic tDNAs found, i.e., 145363 tDNAs in total. They are assigned to: V:9052 M:3187 I:7746 L:12803 F:4263 A:11402 T:8685 P:7636 E:7119 D:5513 K:8266 N:5025 Q:5374 H:2937 Y:3851 G:10709 S:11371 R:11497 W:2898 O:0 C:4012 X:2017. They include 132 archaeal, 1241 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1373 tDNAs in total. They are assigned to: V:0 M:0 I:1373 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: CFWLSY Group 2: RNIKTMX Group 3: QEDH Group 4: VA Group 5: G Group 6: P Chronology: MICQVKTWFNHGAXYPEDRSL ch_aaR_sim: 18.0004 -------------------------------------------------------------------------- Min values: score = 55.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5833 archaeal, 57366 bacterial, and 81412 eukaryotic tDNAs found, i.e., 144611 tDNAs in total. They are assigned to: V:9039 M:3185 I:7726 L:12687 F:4252 A:11279 T:8677 P:7606 E:7049 D:5469 K:8249 N:5020 Q:5315 H:2923 Y:3834 G:10664 S:11344 R:11436 W:2888 O:0 C:3994 X:1975. They include 132 archaeal, 1235 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1367 tDNAs in total. They are assigned to: V:0 M:0 I:1367 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: AV Group 2: IMNXKTR Group 3: HQED Group 4: YWFCSL Group 5: G Group 6: P Chronology: MIAHWKTCFNQGVXYPEDRSL ch_aaR_sim: 18.0105 -------------------------------------------------------------------------- Min values: score = 55.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5820 archaeal, 57252 bacterial, and 80799 eukaryotic tDNAs found, i.e., 143871 tDNAs in total. They are assigned to: V:9028 M:3181 I:7715 L:12615 F:4226 A:11213 T:8664 P:7586 E:7008 D:5402 K:8236 N:5010 Q:5243 H:2909 Y:3821 G:10565 S:11306 R:11339 W:2883 O:0 C:3983 X:1938. They include 132 archaeal, 1230 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1362 tDNAs in total. They are assigned to: V:0 M:0 I:1362 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: EQDH Group 2: AV Group 3: WLSCYF Group 4: KNTRIMX Group 5: G Group 6: P Chronology: MIQAWKTCFNHGVXYPEDRSL ch_aaR_sim: 18.0178 -------------------------------------------------------------------------- Min values: score = 56.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5785 archaeal, 57138 bacterial, and 80085 eukaryotic tDNAs found, i.e., 143008 tDNAs in total. They are assigned to: V:9007 M:3180 I:7710 L:12527 F:4223 A:11101 T:8653 P:7540 E:6812 D:5356 K:8212 N:5004 Q:5192 H:2883 Y:3797 G:10513 S:11282 R:11243 W:2870 O:0 C:3976 X:1927. They include 132 archaeal, 1230 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1362 tDNAs in total. They are assigned to: V:0 M:0 I:1362 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: VA Group 2: SCWFYL Group 3: QHED Group 4: ITMXKRN Group 5: G Group 6: P Chronology: MIVCQKTWHNFGAXYPDERSL ch_aaR_sim: 18.1161 -------------------------------------------------------------------------- Min values: score = 56.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5757 archaeal, 56988 bacterial, and 79343 eukaryotic tDNAs found, i.e., 142088 tDNAs in total. They are assigned to: V:8993 M:3176 I:7681 L:12427 F:4218 A:10947 T:8643 P:7501 E:6725 D:5238 K:8197 N:4977 Q:5131 H:2851 Y:3783 G:10453 S:11253 R:11189 W:2853 O:0 C:3950 X:1902. They include 132 archaeal, 1227 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1359 tDNAs in total. They are assigned to: V:0 M:0 I:1359 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: QHED Group 2: YSLWCF Group 3: AV Group 4: XMKINRT Group 5: G Group 6: P Chronology: MIQWAKTCHNFGVXYPDERSL ch_aaR_sim: 18.1287 -------------------------------------------------------------------------- Min values: score = 57.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5734 archaeal, 56828 bacterial, and 78630 eukaryotic tDNAs found, i.e., 141192 tDNAs in total. They are assigned to: V:8966 M:3168 I:7664 L:12242 F:4211 A:10882 T:8609 P:7458 E:6604 D:5213 K:8187 N:4959 Q:5089 H:2814 Y:3745 G:10412 S:11209 R:11125 W:2834 O:0 C:3933 X:1868. They include 132 archaeal, 1224 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1356 tDNAs in total. They are assigned to: V:0 M:0 I:1356 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: AV Group 2: SYLWCF Group 3: QDEH Group 4: IKNMXTR Group 5: G Group 6: P Chronology: MIAWQKTCHNFGVXYPDERSL ch_aaR_sim: 18.1349 -------------------------------------------------------------------------- Min values: score = 57.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5692 archaeal, 56654 bacterial, and 77847 eukaryotic tDNAs found, i.e., 140193 tDNAs in total. They are assigned to: V:8932 M:3166 I:7646 L:12125 F:4198 A:10761 T:8569 P:7396 E:6428 D:5180 K:8174 N:4951 Q:5037 H:2741 Y:3731 G:10335 S:11185 R:11062 W:2824 O:0 C:3912 X:1840. They include 132 archaeal, 1221 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1353 tDNAs in total. They are assigned to: V:0 M:0 I:1353 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: TMXKIRN Group 2: VA Group 3: DEQH Group 4: CYFSLW Group 5: G Group 6: P Chronology: MIVQCKTFHWNGAYXPDERSL ch_aaR_sim: 18.1525 -------------------------------------------------------------------------- Min values: score = 58.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5673 archaeal, 56444 bacterial, and 77068 eukaryotic tDNAs found, i.e., 139185 tDNAs in total. They are assigned to: V:8872 M:3155 I:7631 L:11995 F:4189 A:10697 T:8554 P:7346 E:6316 D:5143 K:8149 N:4948 Q:4989 H:2636 Y:3712 G:10258 S:11150 R:10985 W:2794 O:0 C:3895 X:1771. They include 132 archaeal, 1218 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1350 tDNAs in total. They are assigned to: V:0 M:0 I:1350 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: TRIKNMX Group 2: QEHD Group 3: VA Group 4: YSFCLW Group 5: G Group 6: P Chronology: MIQVFKTCHWNGAYXPDERSL ch_aaR_sim: 18.1636 -------------------------------------------------------------------------- Min values: score = 58.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5643 archaeal, 56281 bacterial, and 76051 eukaryotic tDNAs found, i.e., 137975 tDNAs in total. They are assigned to: V:8837 M:3151 I:7617 L:11835 F:4185 A:10637 T:8534 P:7241 E:6220 D:5023 K:8134 N:4939 Q:4894 H:2589 Y:3698 G:10106 S:11119 R:10932 W:2786 O:0 C:3875 X:1623. They include 132 archaeal, 1217 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1349 tDNAs in total. They are assigned to: V:0 M:0 I:1349 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: QEHD Group 2: KIRTMXN Group 3: AV Group 4: FCLYWS Group 5: G Group 6: P Chronology: MIQAFKTCHWNGVYXPDERSL ch_aaR_sim: 18.1801 -------------------------------------------------------------------------- Min values: score = 59.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5613 archaeal, 56062 bacterial, and 75052 eukaryotic tDNAs found, i.e., 136727 tDNAs in total. They are assigned to: V:8807 M:3144 I:7608 L:11606 F:4163 A:10453 T:8515 P:7182 E:6107 D:5001 K:8113 N:4929 Q:4768 H:2537 Y:3678 G:9963 S:11086 R:10870 W:2757 O:0 C:3828 X:1612. They include 132 archaeal, 1215 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1347 tDNAs in total. They are assigned to: V:0 M:0 I:1347 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: VA Group 2: NIMTXKR Group 3: HQED Group 4: CFWSYL Group 5: G Group 6: P Chronology: MIVQCKTWHFNGAXYPDERSL ch_aaR_sim: 18.1808 -------------------------------------------------------------------------- Min values: score = 59.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5591 archaeal, 55844 bacterial, and 74244 eukaryotic tDNAs found, i.e., 135679 tDNAs in total. They are assigned to: V:8793 M:3142 I:7596 L:11400 F:4114 A:10354 T:8502 P:7148 E:5999 D:4980 K:8096 N:4918 Q:4700 H:2475 Y:3643 G:9890 S:11036 R:10764 W:2734 O:0 C:3810 X:1585. They include 132 archaeal, 1215 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1347 tDNAs in total. They are assigned to: V:0 M:0 I:1347 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: QHED Group 2: VA Group 3: MIXTRKNF Group 4: CYSLW Group 5: G Group 6: P Chronology: MIQVCKTWHYNGAXFPDESRL ch_aaR_sim: 18.2029 -------------------------------------------------------------------------- Min values: score = 60.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5545 archaeal, 55629 bacterial, and 73330 eukaryotic tDNAs found, i.e., 134504 tDNAs in total. They are assigned to: V:8755 M:3135 I:7582 L:11170 F:4096 A:10175 T:8478 P:7052 E:5922 D:4897 K:8074 N:4899 Q:4648 H:2412 Y:3621 G:9826 S:10997 R:10710 W:2712 O:0 C:3784 X:1559. They include 132 archaeal, 1213 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1345 tDNAs in total. They are assigned to: V:0 M:0 I:1345 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: AV Group 2: DQEH Group 3: CWLYS Group 4: MINXKTFR Group 5: G Group 6: P Chronology: MIAQCKTWHYNGVXFPDESRL ch_aaR_sim: 18.2115 -------------------------------------------------------------------------- Min values: score = 60.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5516 archaeal, 55283 bacterial, and 71008 eukaryotic tDNAs found, i.e., 131807 tDNAs in total. They are assigned to: V:8698 M:3100 I:7561 L:10999 F:4075 A:10089 T:8463 P:6971 E:5577 D:4761 K:8053 N:4887 Q:4547 H:2007 Y:3594 G:9630 S:10923 R:10638 W:2679 O:0 C:3764 X:791. They include 124 archaeal, 1212 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1336 tDNAs in total. They are assigned to: V:0 M:0 I:1336 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: CSYWL Group 2: VA Group 3: HQDE Group 4: IKTRNMXF Group 5: G Group 6: P Chronology: MICVHKTWQYNGAXFPDESRL ch_aaR_sim: 18.2266 -------------------------------------------------------------------------- Min values: score = 61.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5485 archaeal, 54985 bacterial, and 70001 eukaryotic tDNAs found, i.e., 130471 tDNAs in total. They are assigned to: V:8665 M:3088 I:7539 L:10811 F:4064 A:9981 T:8437 P:6903 E:5486 D:4667 K:8045 N:4866 Q:4480 H:1829 Y:3552 G:9483 S:10855 R:10549 W:2672 O:0 C:3733 X:766. They include 124 archaeal, 1206 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1330 tDNAs in total. They are assigned to: V:0 M:0 I:1330 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: AV Group 2: CWYLS Group 3: EHDQ Group 4: KTRINMXF Group 5: G Group 6: P Chronology: MIACHKTWQYNGVXFPDESRL ch_aaR_sim: 18.2337 -------------------------------------------------------------------------- Min values: score = 61.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5434 archaeal, 54703 bacterial, and 68906 eukaryotic tDNAs found, i.e., 129043 tDNAs in total. They are assigned to: V:8622 M:3078 I:7528 L:10609 F:4054 A:9853 T:8408 P:6774 E:5357 D:4543 K:8023 N:4850 Q:4408 H:1784 Y:3464 G:9411 S:10811 R:10458 W:2656 O:0 C:3700 X:652. They include 124 archaeal, 1205 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1329 tDNAs in total. They are assigned to: V:0 M:0 I:1329 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: WLCYS Group 2: QHED Group 3: ITKMXNRF Group 4: VA Group 5: G Group 6: P Chronology: MIWQVKTCHYNGAXFPDESRL ch_aaR_sim: 18.2401 -------------------------------------------------------------------------- Min values: score = 62.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5391 archaeal, 54339 bacterial, and 67800 eukaryotic tDNAs found, i.e., 127530 tDNAs in total. They are assigned to: V:8580 M:3054 I:7515 L:10410 F:4004 A:9760 T:8378 P:6613 E:5238 D:4326 K:8008 N:4826 Q:4337 H:1750 Y:3436 G:9258 S:10736 R:10376 W:2635 O:0 C:3648 X:642. They include 124 archaeal, 1204 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1328 tDNAs in total. They are assigned to: V:0 M:0 I:1328 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: TIMXKNRF Group 2: CWSLY Group 3: VA Group 4: EQDH Group 5: G Group 6: P Chronology: MICVQKTWHYNGAXFPDESRL ch_aaR_sim: 18.2443 -------------------------------------------------------------------------- Min values: score = 62.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5351 archaeal, 54033 bacterial, and 66669 eukaryotic tDNAs found, i.e., 126053 tDNAs in total. They are assigned to: V:8537 M:3024 I:7475 L:10245 F:3987 A:9674 T:8353 P:6418 E:5126 D:4283 K:7987 N:4813 Q:4258 H:1718 Y:3390 G:8992 S:10657 R:10269 W:2622 O:0 C:3596 X:629. They include 124 archaeal, 1202 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1326 tDNAs in total. They are assigned to: V:0 M:0 I:1326 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: AV Group 2: LSWCY Group 3: EDQH Group 4: NMIXKTRF Group 5: G Group 6: P Chronology: MIAWQKTCHYNGVXFPDESRL ch_aaR_sim: 18.2659 -------------------------------------------------------------------------- Min values: score = 63.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5323 archaeal, 53664 bacterial, and 65710 eukaryotic tDNAs found, i.e., 124697 tDNAs in total. They are assigned to: V:8480 M:3016 I:7456 L:10097 F:3963 A:9595 T:8291 P:6306 E:4945 D:4208 K:7958 N:4796 Q:4177 H:1666 Y:3350 G:8921 S:10569 R:10143 W:2617 O:0 C:3563 X:580. They include 124 archaeal, 1199 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1323 tDNAs in total. They are assigned to: V:0 M:0 I:1323 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: YWSLC Group 2: EHDQ Group 3: AV Group 4: INTRMXKF Group 5: G Group 6: P Chronology: MIWHAKTCQYNGVXFPDESRL ch_aaR_sim: 18.2646 -------------------------------------------------------------------------- Min values: score = 63.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5257 archaeal, 53309 bacterial, and 64236 eukaryotic tDNAs found, i.e., 122802 tDNAs in total. They are assigned to: V:8433 M:3002 I:7438 L:9900 F:3920 A:9180 T:8252 P:6250 E:4860 D:4103 K:7936 N:4764 Q:4113 H:1341 Y:3305 G:8847 S:10477 R:10036 W:2608 O:0 C:3511 X:526. They include 124 archaeal, 1195 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1319 tDNAs in total. They are assigned to: V:0 M:0 I:1319 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: VACF Group 2: LSYHW Group 3: QDE Group 4: TMKXNRI Group 5: G Group 6: P Chronology: MIAYQKTHCWNGFXEVDPSRL ch_aaR_sim: 18.2670 -------------------------------------------------------------------------- Min values: score = 64.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5196 archaeal, 52941 bacterial, and 63082 eukaryotic tDNAs found, i.e., 121219 tDNAs in total. They are assigned to: V:8370 M:2975 I:7396 L:9685 F:3902 A:9004 T:8211 P:6116 E:4788 D:4027 K:7922 N:4728 Q:3972 H:1266 Y:3251 G:8712 S:10379 R:9935 W:2594 O:0 C:3484 X:502. They include 114 archaeal, 1193 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1307 tDNAs in total. They are assigned to: V:0 M:0 I:1307 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: YWSLH Group 2: MNTXKRI Group 3: QED Group 4: VACF Group 5: G Group 6: P Chronology: MIYQAKTHCWNGFXEVDPSRL ch_aaR_sim: 18.2781 -------------------------------------------------------------------------- Min values: score = 64.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5136 archaeal, 52526 bacterial, and 61632 eukaryotic tDNAs found, i.e., 119294 tDNAs in total. They are assigned to: V:8306 M:2732 I:7372 L:9464 F:3889 A:8829 T:8173 P:6034 E:4660 D:3992 K:7886 N:4667 Q:3863 H:1238 Y:3215 G:8636 S:10221 R:9615 W:2568 O:0 C:3442 X:492. They include 114 archaeal, 1185 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1299 tDNAs in total. They are assigned to: V:0 M:0 I:1299 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: KITMXRN Group 2: WLYSH Group 3: CAVF Group 4: DEQ Group 5: G Group 6: P Chronology: MIYCEKTHAWNGFXQVDPSRL ch_aaR_sim: 18.2955 -------------------------------------------------------------------------- Min values: score = 65.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 5054 archaeal, 52035 bacterial, and 60571 eukaryotic tDNAs found, i.e., 117660 tDNAs in total. They are assigned to: V:8234 M:2702 I:7323 L:9230 F:3864 A:8773 T:8125 P:5973 E:4542 D:3945 K:7851 N:4633 Q:3751 H:1219 Y:3126 G:8574 S:10091 R:9333 W:2532 O:0 C:3396 X:443. They include 114 archaeal, 1182 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1296 tDNAs in total. They are assigned to: V:0 M:0 I:1296 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: QED Group 2: WHYSL Group 3: IKTNMXR Group 4: ACVF Group 5: G Group 6: P Chronology: MIQHAKTYCWNGFEXVDPSRL ch_aaR_sim: 18.3012 -------------------------------------------------------------------------- Min values: score = 65.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 4974 archaeal, 51359 bacterial, and 59459 eukaryotic tDNAs found, i.e., 115792 tDNAs in total. They are assigned to: V:8122 M:2667 I:7305 L:8971 F:3799 A:8643 T:8088 P:5891 E:4386 D:3783 K:7831 N:4583 Q:3546 H:1177 Y:3081 G:8412 S:9999 R:9226 W:2518 O:0 C:3334 X:430. They include 114 archaeal, 1180 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1294 tDNAs in total. They are assigned to: V:0 M:0 I:1294 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: AVCF Group 2: IMXKTNR Group 3: YLHWS Group 4: EDQ Group 5: G Group 6: P Chronology: MIAYQKTHCWNGFPXVDESRL ch_aaR_sim: 18.3152 -------------------------------------------------------------------------- Min values: score = 66.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 4903 archaeal, 50883 bacterial, and 58257 eukaryotic tDNAs found, i.e., 114043 tDNAs in total. They are assigned to: V:8058 M:2632 I:7263 L:8713 F:3704 A:8525 T:8031 P:5784 E:4267 D:3717 K:7799 N:4539 Q:3485 H:1152 Y:3022 G:8335 S:9899 R:8950 W:2451 O:0 C:3294 X:423. They include 114 archaeal, 1172 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1286 tDNAs in total. They are assigned to: V:0 M:0 I:1286 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: EDQ Group 2: NTRKIMX Group 3: YSHLW Group 4: ACFV Group 5: G Group 6: P Chronology: MIQYAKTHCWNGFPXVDESRL ch_aaR_sim: 18.3338 -------------------------------------------------------------------------- Min values: score = 66.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 4833 archaeal, 50255 bacterial, and 57167 eukaryotic tDNAs found, i.e., 112255 tDNAs in total. They are assigned to: V:7985 M:2588 I:7220 L:8431 F:3666 A:8423 T:7963 P:5672 E:4176 D:3685 K:7780 N:4511 Q:3398 H:1101 Y:2970 G:8183 S:9779 R:8763 W:2349 O:0 C:3217 X:395. They include 114 archaeal, 1160 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1274 tDNAs in total. They are assigned to: V:0 M:0 I:1274 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: WHYSL Group 2: IMXKNTR Group 3: AVCF Group 4: DEQ Group 5: G Group 6: P Chronology: MIHAQKTYCWNGFPXVDESRL ch_aaR_sim: 18.3444 -------------------------------------------------------------------------- Min values: score = 67.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 4752 archaeal, 49513 bacterial, and 55090 eukaryotic tDNAs found, i.e., 109355 tDNAs in total. They are assigned to: V:7894 M:2559 I:7188 L:8207 F:3612 A:8338 T:7884 P:5609 E:3887 D:2993 K:7754 N:4486 Q:3191 H:1070 Y:2892 G:7740 S:9666 R:8532 W:2307 O:0 C:3156 X:390. They include 114 archaeal, 1157 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1271 tDNAs in total. They are assigned to: V:0 M:0 I:1271 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: IMXTNRK Group 2: SYHLW Group 3: QED Group 4: CAVF Group 5: G Group 6: P Chronology: MIYQCKTHAWNGFPXVDESRL ch_aaR_sim: 18.3607 -------------------------------------------------------------------------- Min values: score = 67.5000 isoscore = 0.0000 isoscore_ac = 0.0000 ++ Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 4661 archaeal, 48792 bacterial, and 53609 eukaryotic tDNAs found, i.e., 107062 tDNAs in total. They are assigned to: V:7772 M:2481 I:7139 L:7905 F:3549 A:8200 T:7814 P:5264 E:3769 D:2904 K:7721 N:4455 Q:3079 H:1034 Y:2835 G:7627 S:9523 R:8266 W:2256 O:0 C:3096 X:373. They include 114 archaeal, 1155 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1269 tDNAs in total. They are assigned to: V:0 M:0 I:1269 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: KMIXTNR Group 2: LFYSCW Group 3: EQH Group 4: VAD Group 5: G Group 6: P Chronology: MICQVKTWHYNGFAPXDERSL ch_aaR_sim: 18.3704 -------------------------------------------------------------------------- Min values: score = 68.0000 isoscore = 0.0000 isoscore_ac = 0.0000 ++ Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 4578 archaeal, 48206 bacterial, and 52055 eukaryotic tDNAs found, i.e., 104839 tDNAs in total. They are assigned to: V:7506 M:2425 I:7118 L:7669 F:3504 A:8066 T:7722 P:5121 E:3702 D:2850 K:7699 N:4404 Q:2981 H:917 Y:2797 G:7485 S:9439 R:7839 W:2210 O:0 C:3022 X:363. They include 114 archaeal, 1153 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1267 tDNAs in total. They are assigned to: V:0 M:0 I:1267 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: VAD Group 2: YSLFCW Group 3: QEH Group 4: MTXKINR Group 5: G Group 6: P Chronology: MIVCQKTWHYNGFAPXDERSL ch_aaR_sim: 18.4070 -------------------------------------------------------------------------- Min values: score = 68.5000 isoscore = 0.0000 isoscore_ac = 0.0000 ++ Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 4497 archaeal, 47405 bacterial, and 50811 eukaryotic tDNAs found, i.e., 102713 tDNAs in total. They are assigned to: V:7400 M:2369 I:7041 L:7431 F:3388 A:7819 T:7576 P:4947 E:3589 D:2756 K:7666 N:4369 Q:2847 H:875 Y:2746 G:7422 S:9334 R:7688 W:2154 O:0 C:2956 X:340. They include 114 archaeal, 1150 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1264 tDNAs in total. They are assigned to: V:0 M:0 I:1264 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: VAD Group 2: TIKNMXR Group 3: LSYWCF Group 4: QEH Group 5: G Group 6: P Chronology: MIVWQKTCHYNGFAPXDERSL ch_aaR_sim: 18.4270 -------------------------------------------------------------------------- Min values: score = 69.0000 isoscore = 0.0000 isoscore_ac = 0.0000 ++ Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 4387 archaeal, 46544 bacterial, and 49222 eukaryotic tDNAs found, i.e., 100153 tDNAs in total. They are assigned to: V:7244 M:2321 I:6983 L:7192 F:3300 A:7633 T:7474 P:4582 E:3304 D:2749 K:7625 N:4338 Q:2724 H:806 Y:2688 G:7355 S:9195 R:7354 W:2118 O:0 C:2877 X:291. They include 114 archaeal, 1143 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1257 tDNAs in total. They are assigned to: V:0 M:0 I:1257 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: VAD Group 2: IRNTMXK Group 3: CWSFLY Group 4: EQH Group 5: G Group 6: P Chronology: MIVCQKTWHYNGFAPXDERSL ch_aaR_sim: 18.4374 -------------------------------------------------------------------------- Min values: score = 69.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 4253 archaeal, 45677 bacterial, and 47725 eukaryotic tDNAs found, i.e., 97655 tDNAs in total. They are assigned to: V:7116 M:2270 I:6885 L:6919 F:3250 A:7473 T:7407 P:4442 E:3165 D:2717 K:7580 N:4288 Q:2426 H:760 Y:2655 G:7222 S:9070 R:6942 W:2090 O:0 C:2768 X:210. They include 114 archaeal, 1135 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1249 tDNAs in total. They are assigned to: V:0 M:0 I:1249 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: QED Group 2: RTKNIMX Group 3: AFCV Group 4: LSHWY Group 5: G Group 6: P Chronology: MIQAHKTYCWNGFPVDXERSL ch_aaR_sim: 18.4424 -------------------------------------------------------------------------- Min values: score = 70.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 4145 archaeal, 44832 bacterial, and 45874 eukaryotic tDNAs found, i.e., 94851 tDNAs in total. They are assigned to: V:6992 M:2213 I:6794 L:6417 F:3209 A:7314 T:7288 P:4316 E:3066 D:2225 K:7534 N:4222 Q:2317 H:726 Y:2618 G:7128 S:8956 R:6634 W:2064 O:0 C:2637 X:181. They include 114 archaeal, 1129 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1243 tDNAs in total. They are assigned to: V:0 M:0 I:1243 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: KIMXTNRF Group 2: EQ Group 3: ADV Group 4: WYHSLC Group 5: G Group 6: P Chronology: MIQAWCTKHFNGYVPDXERSL ch_aaR_sim: 18.5340 -------------------------------------------------------------------------- Min values: score = 70.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 4039 archaeal, 43912 bacterial, and 43353 eukaryotic tDNAs found, i.e., 91304 tDNAs in total. They are assigned to: V:6864 M:2176 I:6692 L:6138 F:3155 A:7020 T:7161 P:3229 E:2821 D:2176 K:7484 N:4107 Q:2159 H:674 Y:2567 G:7072 S:8732 R:6306 W:2037 O:0 C:2564 X:170. They include 114 archaeal, 1127 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1241 tDNAs in total. They are assigned to: V:0 M:0 I:1241 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: YHSLWC Group 2: QE Group 3: ITKRMXNF Group 4: VDA Group 5: G Group 6: P Chronology: MIWQVCTKHFNGYAEDXPRSL ch_aaR_sim: 18.5453 -------------------------------------------------------------------------- Min values: score = 71.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 3930 archaeal, 42790 bacterial, and 41914 eukaryotic tDNAs found, i.e., 88634 tDNAs in total. They are assigned to: V:6756 M:2140 I:6538 L:5841 F:3016 A:6843 T:7038 P:3118 E:2676 D:2137 K:7444 N:3981 Q:1915 H:627 Y:2487 G:6904 S:8545 R:5973 W:2005 O:0 C:2484 X:166. They include 114 archaeal, 1124 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1238 tDNAs in total. They are assigned to: V:0 M:0 I:1238 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: RKMXTIFN Group 2: LYHSWC Group 3: VDA Group 4: QE Group 5: G Group 6: P Chronology: MIWVQCTKHFNGYAEDXPRSL ch_aaR_sim: 18.5789 -------------------------------------------------------------------------- Min values: score = 71.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 3796 archaeal, 41897 bacterial, and 40201 eukaryotic tDNAs found, i.e., 85894 tDNAs in total. They are assigned to: V:6594 M:2093 I:6357 L:5554 F:2938 A:6576 T:6930 P:3000 E:2506 D:2104 K:7328 N:3913 Q:1717 H:586 Y:2447 G:6797 S:8358 R:5562 W:1982 O:0 C:2386 X:166. They include 114 archaeal, 1119 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1233 tDNAs in total. They are assigned to: V:0 M:0 I:1233 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: VDA Group 2: TKMXFINR Group 3: HYLCWS Group 4: QE Group 5: G Group 6: P Chronology: MIVWQCKTHFGNYAEDXPRSL ch_aaR_sim: 18.6217 -------------------------------------------------------------------------- Min values: score = 72.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 3688 archaeal, 40926 bacterial, and 38131 eukaryotic tDNAs found, i.e., 82745 tDNAs in total. They are assigned to: V:6362 M:2059 I:6243 L:5294 F:2848 A:6388 T:6747 P:2885 E:2415 D:2047 K:7263 N:3815 Q:1264 H:554 Y:2304 G:6473 S:8145 R:5309 W:1855 O:0 C:2319 X:156. They include 113 archaeal, 1110 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1223 tDNAs in total. They are assigned to: V:0 M:0 I:1223 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: VADC Group 2: HYWSL Group 3: TFNMXKIR Group 4: QE Group 5: G Group 6: P Chronology: MIAYQKTHCFGNWEVDXPRSL ch_aaR_sim: 18.6558 -------------------------------------------------------------------------- Min values: score = 72.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 3599 archaeal, 39851 bacterial, and 36613 eukaryotic tDNAs found, i.e., 80063 tDNAs in total. They are assigned to: V:6122 M:2027 I:6099 L:4943 F:2814 A:6214 T:6553 P:2748 E:2207 D:2034 K:7217 N:3744 Q:1090 H:521 Y:2114 G:6412 S:7987 R:5001 W:1802 O:0 C:2260 X:154. They include 113 archaeal, 1103 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1216 tDNAs in total. They are assigned to: V:0 M:0 I:1216 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: VDA Group 2: EQ Group 3: LYHWSC Group 4: TKRINMXF Group 5: G Group 6: P Chronology: MIVEWCKTHFNGYAQDXPRSL ch_aaR_sim: 18.6601 -------------------------------------------------------------------------- Min values: score = 73.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory Group 1: TIXMKNRF Group 2: WHYCLS Group 3: AVD Group 4: EQ Group 5: G Group 6: P Chronology: MIWAECKTHFNGYVQDXPRSL ch_aaR_sim: 18.6811 -------------------------------------------------------------------------- Min values: score = 73.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 3435 archaeal, 37430 bacterial, and 33467 eukaryotic tDNAs found, i.e., 74332 tDNAs in total. They are assigned to: V:5641 M:1879 I:5760 L:4329 F:2721 A:5877 T:6258 P:2516 E:1414 D:1921 K:7043 N:3549 Q:875 H:459 Y:1898 G:6097 S:7679 R:4654 W:1501 O:0 C:2115 X:146. They include 112 archaeal, 1070 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1182 tDNAs in total. They are assigned to: V:0 M:0 I:1182 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: EQ Group 2: IMXKTRNF Group 3: DAV Group 4: WSCYHL Group 5: G Group 6: P Chronology: MIEAWCKTHFNGYVQDXPRSL ch_aaR_sim: 18.7311 -------------------------------------------------------------------------- Min values: score = 74.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 3378 archaeal, 36322 bacterial, and 31636 eukaryotic tDNAs found, i.e., 71336 tDNAs in total. They are assigned to: V:5525 M:1801 I:5633 L:3989 F:2623 A:5710 T:6065 P:2438 E:1318 D:1912 K:6925 N:3315 Q:673 H:420 Y:1822 G:5467 S:7521 R:4523 W:1451 O:0 C:2059 X:146. They include 111 archaeal, 1058 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1169 tDNAs in total. They are assigned to: V:0 M:0 I:1169 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: ACVD Group 2: KFMXITNR Group 3: HYLSW Group 4: QE Group 5: G Group 6: P Chronology: MIAHQFTKYCNGWPVDXERSL ch_aaR_sim: 18.7734 -------------------------------------------------------------------------- Min values: score = 74.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 3276 archaeal, 35163 bacterial, and 29728 eukaryotic tDNAs found, i.e., 68167 tDNAs in total. They are assigned to: V:5363 M:1729 I:5471 L:3405 F:2569 A:5492 T:5922 P:2336 E:1213 D:1850 K:6881 N:3209 Q:564 H:375 Y:1597 G:5310 S:7353 R:4223 W:1306 O:0 C:1853 X:146. They include 110 archaeal, 1039 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1149 tDNAs in total. They are assigned to: V:0 M:0 I:1149 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: TIKRMXFN Group 2: VDA Group 3: QE Group 4: LSHYWC Group 5: G Group 6: P Chronology: MIVQWCKTHFNGYAPDXERSL ch_aaR_sim: 18.8004 -------------------------------------------------------------------------- Min values: score = 75.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 3209 archaeal, 33853 bacterial, and 28239 eukaryotic tDNAs found, i.e., 65301 tDNAs in total. They are assigned to: V:5224 M:1684 I:5393 L:2921 F:2536 A:4910 T:5771 P:2160 E:1165 D:1823 K:6769 N:3164 Q:511 H:339 Y:1406 G:5240 S:7231 R:3965 W:1162 O:0 C:1782 X:145. They include 109 archaeal, 1020 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1129 tDNAs in total. They are assigned to: V:0 M:0 I:1129 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: RKMXIFTN Group 2: VDA Group 3: SYLWHC Group 4: EQ Group 5: G Group 6: P Chronology: MIVWQCKTHFNGYAPDXERSL ch_aaR_sim: 18.8445 -------------------------------------------------------------------------- Min values: score = 75.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 3117 archaeal, 32490 bacterial, and 26653 eukaryotic tDNAs found, i.e., 62260 tDNAs in total. They are assigned to: V:5059 M:1633 I:5333 L:2601 F:2403 A:4543 T:5572 P:1881 E:1021 D:1807 K:6668 N:3101 Q:393 H:312 Y:1127 G:5022 S:7085 R:3806 W:1052 O:0 C:1697 X:144. They include 108 archaeal, 1010 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1118 tDNAs in total. They are assigned to: V:0 M:0 I:1118 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: QE Group 2: KMXTNFIR Group 3: YHLWSC Group 4: VAD Group 5: G Group 6: P Chronology: MIQWVCKTHFNGYAPDXERSL ch_aaR_sim: 18.8490 -------------------------------------------------------------------------- Min values: score = 76.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 3072 archaeal, 31278 bacterial, and 25433 eukaryotic tDNAs found, i.e., 59783 tDNAs in total. They are assigned to: V:4939 M:1515 I:5076 L:2353 F:2343 A:4332 T:5363 P:1788 E:974 D:1790 K:6595 N:2961 Q:343 H:291 Y:967 G:4966 S:6925 R:3666 W:799 O:0 C:1655 X:142. They include 105 archaeal, 989 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1094 tDNAs in total. They are assigned to: V:0 M:0 I:1094 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: YWHSL Group 2: EQ Group 3: MIXKRFTN Group 4: AVDC Group 5: G Group 6: P Chronology: MIHQAFTKYCGNWPDVXERSL ch_aaR_sim: 18.8873 -------------------------------------------------------------------------- Min values: score = 76.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 2980 archaeal, 29961 bacterial, and 24277 eukaryotic tDNAs found, i.e., 57218 tDNAs in total. They are assigned to: V:4775 M:1449 I:4938 L:2184 F:2244 A:4069 T:5041 P:1653 E:915 D:1772 K:6439 N:2738 Q:274 H:246 Y:854 G:4875 S:6729 R:3532 W:755 O:0 C:1594 X:142. They include 102 archaeal, 967 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1069 tDNAs in total. They are assigned to: V:0 M:0 I:1069 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: SLYHW Group 2: ACVD Group 3: MXTKNIRF Group 4: QE Group 5: G Group 6: P Chronology: MIHAQFTKYCNGWPDVXERSL ch_aaR_sim: 18.8904 -------------------------------------------------------------------------- Min values: score = 77.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 2862 archaeal, 28820 bacterial, and 23366 eukaryotic tDNAs found, i.e., 55048 tDNAs in total. They are assigned to: V:4539 M:1363 I:4865 L:2002 F:2160 A:3896 T:4861 P:1557 E:867 D:1741 K:6295 N:2652 Q:226 H:220 Y:711 G:4797 S:6517 R:3416 W:713 O:0 C:1509 X:141. They include 101 archaeal, 943 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1044 tDNAs in total. They are assigned to: V:0 M:0 I:1044 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: TMKXNIFR Group 2: YSWLH Group 3: VDAC Group 4: QE Group 5: G Group 6: P Chronology: MIHAQFTKCYNGWEDVXPRSL ch_aaR_sim: 18.8744 -------------------------------------------------------------------------- Min values: score = 77.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 2794 archaeal, 27756 bacterial, and 21354 eukaryotic tDNAs found, i.e., 51904 tDNAs in total. They are assigned to: V:4334 M:1140 I:4768 L:1632 F:2088 A:3673 T:4697 P:1472 E:741 D:1711 K:6047 N:2544 Q:197 H:188 Y:652 G:4645 S:6263 R:3295 W:662 O:0 C:1022 X:133. They include 99 archaeal, 922 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 1021 tDNAs in total. They are assigned to: V:0 M:0 I:1021 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: QE Group 2: TMXKNIFAR Group 3: SHCWLY Group 4: VD Group 5: G Group 6: P Chronology: MIQHVCFTKGYNWEDAPXRSL ch_aaR_sim: 18.9299 -------------------------------------------------------------------------- Min values: score = 78.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 2699 archaeal, 26540 bacterial, and 20181 eukaryotic tDNAs found, i.e., 49420 tDNAs in total. They are assigned to: V:4187 M:989 I:4653 L:1458 F:2020 A:3446 T:4491 P:1406 E:537 D:1662 K:5841 N:2413 Q:161 H:149 Y:502 G:4516 S:6079 R:3166 W:632 O:0 C:979 X:133. They include 98 archaeal, 896 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 994 tDNAs in total. They are assigned to: V:0 M:0 I:994 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: SLCWYH Group 2: EQ Group 3: IRTAKMXFN Group 4: DV Group 5: G Group 6: P Chronology: MIHEVCFTKGYNWQDAPXSRL ch_aaR_sim: 18.9439 -------------------------------------------------------------------------- Min values: score = 78.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 2641 archaeal, 25239 bacterial, and 18597 eukaryotic tDNAs found, i.e., 46477 tDNAs in total. They are assigned to: V:3984 M:923 I:4447 L:1174 F:1743 A:3092 T:4179 P:1298 E:518 D:1630 K:5593 N:2298 Q:146 H:123 Y:361 G:4413 S:5869 R:3033 W:584 O:0 C:936 X:133. They include 95 archaeal, 874 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 969 tDNAs in total. They are assigned to: V:0 M:0 I:969 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: INTKRMXFA Group 2: HYLCWS Group 3: DV Group 4: QE Group 5: G Group 6: P Chronology: MIHVQCFTKGYNWEDAPXSRL ch_aaR_sim: 18.9859 -------------------------------------------------------------------------- Min values: score = 79.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 2536 archaeal, 24034 bacterial, and 17082 eukaryotic tDNAs found, i.e., 43652 tDNAs in total. They are assigned to: V:3692 M:883 I:4273 L:1023 F:1624 A:2806 T:3846 P:1207 E:380 D:1600 K:5470 N:2177 Q:96 H:85 Y:240 G:4347 S:5652 R:2875 W:517 O:0 C:738 X:121. They include 94 archaeal, 804 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 898 tDNAs in total. They are assigned to: V:0 M:0 I:898 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: LSHWCY Group 2: TMIXKRFAN Group 3: VD Group 4: QE Group 5: G Group 6: P Chronology: MIHVQCFTKGYNWEDAXPSRL ch_aaR_sim: 19.0255 -------------------------------------------------------------------------- Min values: score = 79.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 2451 archaeal, 22865 bacterial, and 15547 eukaryotic tDNAs found, i.e., 40863 tDNAs in total. They are assigned to: V:2942 M:828 I:4047 L:927 F:1572 A:2638 T:3662 P:1113 E:244 D:1551 K:5334 N:2108 Q:90 H:77 Y:184 G:4161 S:5369 R:2745 W:490 O:0 C:664 X:117. They include 91 archaeal, 770 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 861 tDNAs in total. They are assigned to: V:0 M:0 I:861 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: MTXFKIRN Group 2: EQ Group 3: VAD Group 4: WLHCYS Group 5: G Group 6: P Chronology: MIEVWCKTGHFNYQADXPRSL ch_aaR_sim: 19.0829 -------------------------------------------------------------------------- Min values: score = 80.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 2390 archaeal, 21424 bacterial, and 14579 eukaryotic tDNAs found, i.e., 38393 tDNAs in total. They are assigned to: V:2690 M:762 I:3918 L:780 F:1538 A:2368 T:3383 P:981 E:208 D:1499 K:5260 N:1779 Q:77 H:72 Y:162 G:3990 S:5159 R:2640 W:422 O:0 C:592 X:113. They include 89 archaeal, 716 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 805 tDNAs in total. They are assigned to: V:0 M:0 I:805 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: LHCYSW Group 2: ITKMXRFN Group 3: VDA Group 4: QE Group 5: G Group 6: P Chronology: MICVQWKTGHNFYEADXPRSL ch_aaR_sim: 19.1652 -------------------------------------------------------------------------- Min values: score = 80.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 2341 archaeal, 20062 bacterial, and 13452 eukaryotic tDNAs found, i.e., 35855 tDNAs in total. They are assigned to: V:2495 M:709 I:3732 L:656 F:1470 A:2116 T:3099 P:885 E:130 D:1404 K:5140 N:1632 Q:68 H:68 Y:128 G:3668 S:4897 R:2527 W:408 O:0 C:511 X:112. They include 89 archaeal, 658 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 747 tDNAs in total. They are assigned to: V:0 M:0 I:747 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: WCSHYL Group 2: VDA Group 3: EQ Group 4: MNRXKFTI Group 5: G Group 6: P Chronology: MIWVECKTGHNFYQADXPRSL ch_aaR_sim: 19.2156 -------------------------------------------------------------------------- Min values: score = 81.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 2276 archaeal, 18945 bacterial, and 11948 eukaryotic tDNAs found, i.e., 33169 tDNAs in total. They are assigned to: V:2281 M:676 I:3508 L:568 F:1386 A:1971 T:2873 P:772 E:107 D:1371 K:5045 N:1007 Q:60 H:65 Y:103 G:3456 S:4538 R:2410 W:383 O:0 C:479 X:110. They include 86 archaeal, 603 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 689 tDNAs in total. They are assigned to: V:0 M:0 I:689 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: WCHSLY Group 2: TFIKMXNR Group 3: EQ Group 4: VDA Group 5: G Group 6: P Chronology: MIWEVCKTGHNFQYADXPRSL ch_aaR_sim: 19.2903 -------------------------------------------------------------------------- Min values: score = 81.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 2227 archaeal, 17272 bacterial, and 10210 eukaryotic tDNAs found, i.e., 29709 tDNAs in total. They are assigned to: V:2079 M:634 I:2869 L:496 F:1333 A:1629 T:2492 P:649 E:101 D:1325 K:4867 N:940 Q:55 H:55 Y:83 G:2658 S:4246 R:2301 W:360 O:0 C:430 X:107. They include 86 archaeal, 548 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 634 tDNAs in total. They are assigned to: V:0 M:0 I:634 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: WCSLYH Group 2: ITKNRMXFA Group 3: VD Group 4: QE Group 5: G Group 6: P Chronology: MIWVQCGTKHNFEYDAPXSRL ch_aaR_sim: 19.3169 -------------------------------------------------------------------------- Min values: score = 82.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 2155 archaeal, 16035 bacterial, and 9125 eukaryotic tDNAs found, i.e., 27315 tDNAs in total. They are assigned to: V:1865 M:579 I:2557 L:463 F:1284 A:1412 T:2300 P:547 E:95 D:1268 K:4724 N:801 Q:50 H:51 Y:72 G:2520 S:3993 R:2165 W:339 O:0 C:130 X:100. They include 86 archaeal, 516 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 602 tDNAs in total. They are assigned to: V:0 M:0 I:602 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: NTKFMX Group 2: QE Group 3: IAVDCR Group 4: HWYSL Group 5: G Group 6: P Chronology: MIQHFCTKNYGAEVWDPXSRL ch_aaR_sim: 19.3780 -------------------------------------------------------------------------- Min values: score = 82.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 2081 archaeal, 14725 bacterial, and 8301 eukaryotic tDNAs found, i.e., 25107 tDNAs in total. They are assigned to: V:1647 M:374 I:2358 L:430 F:1237 A:1222 T:2104 P:413 E:90 D:1239 K:4606 N:706 Q:44 H:45 Y:61 G:2352 S:3821 R:1936 W:313 O:0 C:15 X:94. They include 84 archaeal, 491 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 575 tDNAs in total. They are assigned to: V:0 M:0 I:575 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: CYWLHS Group 2: QE Group 3: TMXFKN Group 4: IRAVD Group 5: G Group 6: P Chronology: MICQFVTKHNAYEGWDPXSRL ch_aaR_sim: 19.2195 -------------------------------------------------------------------------- Min values: score = 83.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 2000 archaeal, 13456 bacterial, and 7725 eukaryotic tDNAs found, i.e., 23181 tDNAs in total. They are assigned to: V:1413 M:291 I:2188 L:402 F:1157 A:980 T:1814 P:348 E:90 D:1203 K:4451 N:613 Q:44 H:41 Y:59 G:2252 S:3665 R:1767 W:296 O:0 C:13 X:94. They include 83 archaeal, 444 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 527 tDNAs in total. They are assigned to: V:0 M:0 I:527 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: MKXTNIRF Group 2: VADW Group 3: QE Group 4: SCYHL Group 5: G Group 6: P Chronology: MTVQYKNCHAIFGEWDPXSRL ch_aaR_sim: 19.3872 -------------------------------------------------------------------------- Min values: score = 83.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 1933 archaeal, 12160 bacterial, and 7260 eukaryotic tDNAs found, i.e., 21353 tDNAs in total. They are assigned to: V:1238 M:228 I:2062 L:379 F:1107 A:877 T:1580 P:279 E:90 D:1159 K:4297 N:523 Q:42 H:36 Y:54 G:2043 S:3396 R:1583 W:282 O:0 C:11 X:87. They include 82 archaeal, 373 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 455 tDNAs in total. They are assigned to: V:0 M:0 I:455 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: FMKRXITN Group 2: QE Group 3: SYHCL Group 4: VADW Group 5: G Group 6: P Chronology: MTQYVKNCHAIEFGWDPXSRL ch_aaR_sim: 19.4087 -------------------------------------------------------------------------- Min values: score = 84.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 1888 archaeal, 10996 bacterial, and 6790 eukaryotic tDNAs found, i.e., 19674 tDNAs in total. They are assigned to: V:1096 M:209 I:1905 L:352 F:1036 A:774 T:1337 P:229 E:89 D:1057 K:4128 N:430 Q:41 H:32 Y:35 G:1905 S:3230 R:1441 W:254 O:0 C:9 X:85. They include 79 archaeal, 333 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 412 tDNAs in total. They are assigned to: V:0 M:0 I:412 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: EQ Group 2: YSLHC Group 3: DVWA Group 4: TRIMXFKN Group 5: G Group 6: P Chronology: MTEYVKNCFHAIQGWDPXSRL ch_aaR_sim: 19.4715 -------------------------------------------------------------------------- Min values: score = 84.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 1831 archaeal, 9959 bacterial, and 6380 eukaryotic tDNAs found, i.e., 18170 tDNAs in total. They are assigned to: V:995 M:148 I:1785 L:329 F:943 A:689 T:1138 P:189 E:87 D:1021 K:3960 N:387 Q:40 H:31 Y:31 G:1763 S:3009 R:1315 W:225 O:0 C:1 X:84. They include 78 archaeal, 315 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 393 tDNAs in total. They are assigned to: V:0 M:0 I:393 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: TRMXKINF Group 2: VDWA Group 3: EQ Group 4: YSCHL Group 5: G Group 6: P Chronology: MTVECHFNKGYAIQWDPXSRL ch_aaR_sim: 19.6883 -------------------------------------------------------------------------- Min values: score = 85.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 1770 archaeal, 8890 bacterial, and 5697 eukaryotic tDNAs found, i.e., 16357 tDNAs in total. They are assigned to: V:793 M:139 I:1638 L:303 F:843 A:470 T:1003 P:168 E:87 D:1002 K:3782 N:164 Q:39 H:31 Y:25 G:1543 S:2813 R:1219 W:217 O:0 C:1 X:77. They include 75 archaeal, 281 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 356 tDNAs in total. They are assigned to: V:0 M:0 I:356 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: YCHSL Group 2: ADVW Group 3: EQ Group 4: KTINRMXF Group 5: G Group 6: P Chronology: MTCAEHFNKGYVQIWDPXSRL ch_aaR_sim: 19.7120 -------------------------------------------------------------------------- Min values: score = 85.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 1725 archaeal, 7835 bacterial, and 5188 eukaryotic tDNAs found, i.e., 14748 tDNAs in total. They are assigned to: V:696 M:116 I:1532 L:282 F:772 A:382 T:752 P:113 E:87 D:943 K:3573 N:132 Q:38 H:30 Y:24 G:1413 S:2622 R:985 W:184 O:0 C:1 X:71. They include 72 archaeal, 239 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 311 tDNAs in total. They are assigned to: V:0 M:0 I:311 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: KNTIMXR Group 2: HLCFSY Group 3: DVWA Group 4: QE Group 5: G Group 6: P Chronology: MTCVQFNKHGYEIAWPDXSRL ch_aaR_sim: 19.8185 -------------------------------------------------------------------------- Min values: score = 86.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 1646 archaeal, 6930 bacterial, and 4706 eukaryotic tDNAs found, i.e., 13282 tDNAs in total. They are assigned to: V:581 M:94 I:1329 L:269 F:739 A:321 T:653 P:100 E:86 D:864 K:3275 N:108 Q:35 H:30 Y:23 G:1289 S:2416 R:857 W:167 O:0 C:1 X:45. They include 72 archaeal, 223 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 295 tDNAs in total. They are assigned to: V:0 M:0 I:295 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: VDAW Group 2: TKMXNIR Group 3: QE Group 4: SCLYHF Group 5: G Group 6: P Chronology: MTVQCFNKHGIYAEWPDXSRL ch_aaR_sim: 19.8874 -------------------------------------------------------------------------- Min values: score = 86.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 1596 archaeal, 6023 bacterial, and 4470 eukaryotic tDNAs found, i.e., 12089 tDNAs in total. They are assigned to: V:468 M:79 I:1091 L:255 F:699 A:258 T:538 P:94 E:76 D:805 K:3128 N:91 Q:35 H:29 Y:21 G:1193 S:2303 R:746 W:135 O:0 C:1 X:44. They include 72 archaeal, 174 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 246 tDNAs in total. They are assigned to: V:0 M:0 I:246 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: TIRKNMX Group 2: SCYLFH Group 3: VDAW Group 4: QE Group 5: G Group 6: P Chronology: MTCVQFNKHGIYAEWPDXSRL ch_aaR_sim: 19.9729 -------------------------------------------------------------------------- Min values: score = 87.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 1535 archaeal, 5333 bacterial, and 4030 eukaryotic tDNAs found, i.e., 10898 tDNAs in total. They are assigned to: V:400 M:69 I:799 L:238 F:682 A:223 T:470 P:71 E:71 D:771 K:2922 N:84 Q:30 H:29 Y:20 G:1047 S:2159 R:683 W:85 O:0 C:1 X:44. They include 68 archaeal, 151 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 219 tDNAs in total. They are assigned to: V:0 M:0 I:219 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: INTKMXR Group 2: CHFSLY Group 3: VWDA Group 4: EQ Group 5: G Group 6: P Chronology: MTCVEFNKHGYAIQWPDXSRL ch_aaR_sim: 19.9669 -------------------------------------------------------------------------- Min values: score = 87.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 1460 archaeal, 4630 bacterial, and 3875 eukaryotic tDNAs found, i.e., 9965 tDNAs in total. They are assigned to: V:349 M:60 I:658 L:217 F:659 A:201 T:378 P:64 E:71 D:684 K:2796 N:61 Q:25 H:26 Y:20 G:977 S:2043 R:573 W:58 O:0 C:1 X:44. They include 63 archaeal, 122 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 185 tDNAs in total. They are assigned to: V:0 M:0 I:185 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: QED Group 2: MNTKX Group 3: RIWVA Group 4: SFHYLC Group 5: G Group 6: P Chronology: MTQVFCNKHGYEAIWPDXSRL ch_aaR_sim: 19.9544 -------------------------------------------------------------------------- Min values: score = 88.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 1407 archaeal, 4132 bacterial, and 2352 eukaryotic tDNAs found, i.e., 7891 tDNAs in total. They are assigned to: V:304 M:53 I:531 L:206 F:515 A:194 T:300 P:58 E:71 D:636 K:1459 N:52 Q:25 H:26 Y:19 G:938 S:1936 R:482 W:45 O:0 C:1 X:40. They include 59 archaeal, 81 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 140 tDNAs in total. They are assigned to: V:0 M:0 I:140 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: MTXFKN Group 2: QED Group 3: CSLYH Group 4: VAIWR Group 5: G Group 6: P Chronology: MTQCVHNFGYAIKEPWDXSRL ch_aaR_sim: 20.0050 -------------------------------------------------------------------------- Min values: score = 88.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 1344 archaeal, 3303 bacterial, and 1818 eukaryotic tDNAs found, i.e., 6465 tDNAs in total. They are assigned to: V:184 M:46 I:403 L:191 F:411 A:168 T:259 P:51 E:68 D:570 K:1293 N:44 Q:21 H:26 Y:18 G:620 S:1578 R:437 W:38 O:0 C:1 X:38. They include 53 archaeal, 71 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 124 tDNAs in total. They are assigned to: V:0 M:0 I:124 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: NTMXF Group 2: IAVRK Group 3: EQD Group 4: SYLCHW Group 5: G Group 6: P Chronology: MTAECHNFGYVIKQWPXDRSL ch_aaR_sim: 20.0323 -------------------------------------------------------------------------- Min values: score = 89.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 1291 archaeal, 2738 bacterial, and 1249 eukaryotic tDNAs found, i.e., 5278 tDNAs in total. They are assigned to: V:146 M:37 I:268 L:144 F:66 A:160 T:209 P:48 E:68 D:516 K:1090 N:35 Q:21 H:25 Y:18 G:523 S:1485 R:354 W:28 O:0 C:1 X:36. They include 51 archaeal, 49 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 100 tDNAs in total. They are assigned to: V:0 M:0 I:100 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: MXTNF Group 2: CYSLHW Group 3: VAIKR Group 4: EQD Group 5: G Group 6: P Chronology: MTCVENHYGQAIKFWPXDRSL ch_aaR_sim: 20.2661 -------------------------------------------------------------------------- Min values: score = 89.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 1232 archaeal, 2276 bacterial, and 1102 eukaryotic tDNAs found, i.e., 4610 tDNAs in total. They are assigned to: V:123 M:36 I:236 L:118 F:56 A:140 T:186 P:46 E:65 D:424 K:1000 N:27 Q:9 H:25 Y:17 G:411 S:1341 R:303 W:17 O:0 C:1 X:29. They include 50 archaeal, 39 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 89 tDNAs in total. They are assigned to: V:0 M:0 I:89 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: VIKRAW Group 2: MXTNF Group 3: SHLYC Group 4: QED Group 5: G Group 6: P Chronology: MTVHQNCEYGAIKFPWXDRSL ch_aaR_sim: 20.3416 -------------------------------------------------------------------------- Min values: score = 90.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 1156 archaeal, 1978 bacterial, and 645 eukaryotic tDNAs found, i.e., 3779 tDNAs in total. They are assigned to: V:109 M:30 I:178 L:108 F:39 A:136 T:168 P:43 E:65 D:384 K:909 N:21 Q:0 H:12 Y:17 G:367 S:888 R:268 W:11 O:0 C:1 X:25. They include 50 archaeal, 23 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 73 tDNAs in total. They are assigned to: V:0 M:0 I:73 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: RVKIA Group 2: NTMX Group 3: WFYLS Group 4: EHDC Group 5: G Group 6: P Chronology: MTVFHNCYGAIKEPWXDRSL ch_aaR_sim: 20.4740 -------------------------------------------------------------------------- Min values: score = 90.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 1115 archaeal, 1720 bacterial, and 498 eukaryotic tDNAs found, i.e., 3333 tDNAs in total. They are assigned to: V:92 M:29 I:151 L:100 F:34 A:116 T:142 P:39 E:61 D:349 K:865 N:18 Q:0 H:12 Y:17 G:336 S:697 R:243 W:7 O:0 C:1 X:24. They include 47 archaeal, 15 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 62 tDNAs in total. They are assigned to: V:0 M:0 I:62 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: YFLSW Group 2: MTXN Group 3: RAIVK Group 4: CEHD Group 5: G Group 6: P Chronology: MTYACNHFGVIKEWPXDRSL ch_aaR_sim: 20.5095 -------------------------------------------------------------------------- Min values: score = 91.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 1062 archaeal, 1336 bacterial, and 365 eukaryotic tDNAs found, i.e., 2763 tDNAs in total. They are assigned to: V:81 M:25 I:141 L:91 F:31 A:108 T:123 P:34 E:61 D:202 K:759 N:17 Q:0 H:12 Y:17 G:254 S:562 R:217 W:4 O:0 C:0 X:24. They include 46 archaeal, 12 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 58 tDNAs in total. They are assigned to: V:0 M:0 I:58 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: TMXNW Group 2: HDYEF Group 3: SL Group 4: VKIRA Group 5: G Group 6: P Chronology: MTHSVNYFAIKEPWXGDRL ch_aaR_sim: 20.5095 -------------------------------------------------------------------------- Min values: score = 91.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 995 archaeal, 1099 bacterial, and 307 eukaryotic tDNAs found, i.e., 2401 tDNAs in total. They are assigned to: V:77 M:25 I:128 L:85 F:30 A:91 T:109 P:29 E:61 D:140 K:655 N:17 Q:0 H:10 Y:16 G:237 S:480 R:190 W:2 O:0 C:0 X:19. They include 46 archaeal, 8 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 54 tDNAs in total. They are assigned to: V:0 M:0 I:54 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: IAVKRW Group 2: TMXNF Group 3: DHYE Group 4: LS Group 5: G Group 6: P Chronology: MNAHSTYVIKFEPWXDGRL ch_aaR_sim: 20.5394 -------------------------------------------------------------------------- Min values: score = 92.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 945 archaeal, 967 bacterial, and 222 eukaryotic tDNAs found, i.e., 2134 tDNAs in total. They are assigned to: V:67 M:22 I:113 L:85 F:24 A:79 T:100 P:28 E:61 D:132 K:627 N:15 Q:0 H:10 Y:9 G:190 S:376 R:176 W:1 O:0 C:0 X:19. They include 45 archaeal, 8 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 53 tDNAs in total. They are assigned to: V:0 M:0 I:53 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: LS Group 2: TNMXF Group 3: EDYH Group 4: WAIKRV Group 5: G Group 6: P Chronology: MNSEWTAHKIFVYPXDGRL ch_aaR_sim: 20.7114 -------------------------------------------------------------------------- Min values: score = 92.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 887 archaeal, 765 bacterial, and 162 eukaryotic tDNAs found, i.e., 1814 tDNAs in total. They are assigned to: V:62 M:15 I:107 L:83 F:20 A:72 T:94 P:28 E:57 D:120 K:449 N:15 Q:0 H:7 Y:5 G:160 S:340 R:161 W:0 O:0 C:0 X:19. They include 41 archaeal, 6 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 47 tDNAs in total. They are assigned to: V:0 M:0 I:47 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: LS Group 2: YHDE Group 3: IKVAR Group 4: TNMXF Group 5: G Group 6: P Chronology: MNSYVTHAIKEFPXDGRL ch_aaR_sim: 20.7671 -------------------------------------------------------------------------- Min values: score = 93.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 842 archaeal, 644 bacterial, and 148 eukaryotic tDNAs found, i.e., 1634 tDNAs in total. They are assigned to: V:56 M:15 I:100 L:77 F:20 A:68 T:79 P:24 E:57 D:111 K:402 N:15 Q:0 H:4 Y:4 G:141 S:298 R:145 W:0 O:0 C:0 X:18. They include 41 archaeal, 3 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 44 tDNAs in total. They are assigned to: V:0 M:0 I:44 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: TNYMX Group 2: SL Group 3: IARKV Group 4: EHDF Group 5: G Group 6: P Chronology: MTSVHNFAIKYRDXGPEL ch_aaR_sim: 20.7680 -------------------------------------------------------------------------- Min values: score = 93.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 777 archaeal, 390 bacterial, and 141 eukaryotic tDNAs found, i.e., 1308 tDNAs in total. They are assigned to: V:52 M:10 I:92 L:74 F:10 A:63 T:69 P:18 E:56 D:9 K:325 N:10 Q:0 H:3 Y:3 G:93 S:267 R:136 W:0 O:0 C:0 X:18. They include 38 archaeal, 1 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 39 tDNAs in total. They are assigned to: V:0 M:0 I:39 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: SL Group 2: MXTN Group 3: RIKAV Group 4: FDYEH Group 5: G Group 6: P Chronology: MNSAFTYHVIKRXDGPEL ch_aaR_sim: 20.7563 -------------------------------------------------------------------------- Min values: score = 94.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 727 archaeal, 332 bacterial, and 134 eukaryotic tDNAs found, i.e., 1193 tDNAs in total. They are assigned to: V:43 M:9 I:88 L:55 F:10 A:61 T:60 P:18 E:54 D:7 K:297 N:10 Q:0 H:3 Y:3 G:85 S:245 R:127 W:0 O:0 C:0 X:18. They include 38 archaeal, 1 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 39 tDNAs in total. They are assigned to: V:0 M:0 I:39 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: TNMX Group 2: VIKRA Group 3: FYDEH Group 4: SL Group 5: G Group 6: P Chronology: MNRFSTYHAIKVXDGPEL ch_aaR_sim: 20.6825 -------------------------------------------------------------------------- Min values: score = 94.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 692 archaeal, 289 bacterial, and 62 eukaryotic tDNAs found, i.e., 1043 tDNAs in total. They are assigned to: V:41 M:8 I:86 L:48 F:10 A:60 T:58 P:13 E:51 D:6 K:287 N:10 Q:0 H:3 Y:3 G:70 S:157 R:116 W:0 O:0 C:0 X:16. They include 38 archaeal, 0 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 38 tDNAs in total. They are assigned to: V:0 M:0 I:38 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: EYHDF Group 2: MNXT Group 3: SL Group 4: AKVRI Group 5: G Group 6: P Chronology: MNYSVTFHAIKRDXPGEL ch_aaR_sim: 20.6337 -------------------------------------------------------------------------- Min values: score = 95.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 638 archaeal, 60 bacterial, and 51 eukaryotic tDNAs found, i.e., 749 tDNAs in total. They are assigned to: V:39 M:8 I:78 L:46 F:10 A:55 T:54 P:10 E:44 D:5 K:77 N:9 Q:0 H:3 Y:3 G:61 S:128 R:104 W:0 O:0 C:0 X:15. They include 38 archaeal, 0 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 38 tDNAs in total. They are assigned to: V:0 M:0 I:38 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: XMNTY Group 2: LS Group 3: HDFE Group 4: RAVKI Group 5: G Group 6: P Chronology: MNSHATFVIKYRDPXGEL ch_aaR_sim: 20.6872 -------------------------------------------------------------------------- Min values: score = 95.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 585 archaeal, 43 bacterial, and 7 eukaryotic tDNAs found, i.e., 635 tDNAs in total. They are assigned to: V:27 M:6 I:73 L:41 F:5 A:54 T:42 P:8 E:43 D:5 K:68 N:8 Q:0 H:2 Y:3 G:59 S:79 R:97 W:0 O:0 C:0 X:15. They include 34 archaeal, 0 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 34 tDNAs in total. They are assigned to: V:0 M:0 I:34 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: YFEHD Group 2: TMXN Group 3: SL Group 4: AIRVK Group 5: G Group 6: P Chronology: MNYSATFHVIKRDXPGEL ch_aaR_sim: 20.7172 -------------------------------------------------------------------------- Min values: score = 96.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 522 archaeal, 33 bacterial, and 2 eukaryotic tDNAs found, i.e., 557 tDNAs in total. They are assigned to: V:23 M:3 I:69 L:34 F:5 A:54 T:36 P:8 E:28 D:5 K:64 N:8 Q:0 H:2 Y:3 G:57 S:64 R:85 W:0 O:0 C:0 X:9. They include 31 archaeal, 0 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 31 tDNAs in total. They are assigned to: V:0 M:0 I:31 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: MXED Group 2: KRVIA Group 3: LS Group 4: HTFYN Group 5: G Group 6: P Chronology: MXVSFYAIKHRNTPDGEL ch_aaR_sim: 20.4663 -------------------------------------------------------------------------- Min values: score = 96.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 478 archaeal, 21 bacterial, and 2 eukaryotic tDNAs found, i.e., 501 tDNAs in total. They are assigned to: V:18 M:3 I:67 L:28 F:4 A:52 T:34 P:6 E:27 D:5 K:59 N:4 Q:0 H:2 Y:0 G:50 S:55 R:79 W:0 O:0 C:0 X:8. They include 30 archaeal, 0 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 30 tDNAs in total. They are assigned to: V:0 M:0 I:30 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: DEH Group 2: TNFMX Group 3: LS Group 4: KRIAV Group 5: G Group 6: P Chronology: MNESATFVIKHPDXRGL ch_aaR_sim: 20.6865 -------------------------------------------------------------------------- Min values: score = 97.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 444 archaeal, 18 bacterial, and 2 eukaryotic tDNAs found, i.e., 464 tDNAs in total. They are assigned to: V:17 M:3 I:57 L:21 F:4 A:51 T:32 P:6 E:26 D:5 K:58 N:4 Q:0 H:1 Y:0 G:47 S:45 R:79 W:0 O:0 C:0 X:8. They include 30 archaeal, 0 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 30 tDNAs in total. They are assigned to: V:0 M:0 I:30 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: ED Group 2: SLMX Group 3: VARIK Group 4: FTHN Group 5: G Group 6: P Chronology: MNEVTFHAIKSPDXRGL ch_aaR_sim: 20.6982 -------------------------------------------------------------------------- Min values: score = 97.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 405 archaeal, 11 bacterial, and 0 eukaryotic tDNAs found, i.e., 416 tDNAs in total. They are assigned to: V:16 M:3 I:52 L:21 F:3 A:49 T:26 P:6 E:24 D:2 K:56 N:4 Q:0 H:1 Y:0 G:36 S:38 R:74 W:0 O:0 C:0 X:5. They include 27 archaeal, 0 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 27 tDNAs in total. They are assigned to: V:0 M:0 I:27 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: KVRIA Group 2: DE Group 3: LS Group 4: HTNMXF Group 5: G Group 6: P Chronology: MNVESTFHAIKPDXRGL ch_aaR_sim: 20.7087 -------------------------------------------------------------------------- Min values: score = 98.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 374 archaeal, 9 bacterial, and 0 eukaryotic tDNAs found, i.e., 383 tDNAs in total. They are assigned to: V:13 M:3 I:52 L:16 F:3 A:49 T:21 P:4 E:23 D:1 K:55 N:3 Q:0 H:1 Y:0 G:35 S:29 R:70 W:0 O:0 C:0 X:5. They include 27 archaeal, 0 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 27 tDNAs in total. They are assigned to: V:0 M:0 I:27 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: SL Group 2: NFMXTH Group 3: DE Group 4: KRIAV Group 5: G Group 6: P Chronology: MNSEATFHVIKPDXRGL ch_aaR_sim: 20.7225 -------------------------------------------------------------------------- Min values: score = 98.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 343 archaeal, 4 bacterial, and 0 eukaryotic tDNAs found, i.e., 347 tDNAs in total. They are assigned to: V:10 M:3 I:51 L:7 F:3 A:47 T:15 P:4 E:19 D:0 K:55 N:2 Q:0 H:1 Y:0 G:35 S:21 R:69 W:0 O:0 C:0 X:5. They include 27 archaeal, 0 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 27 tDNAs in total. They are assigned to: V:0 M:0 I:27 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: KAIVR Group 2: LS Group 3: EMX Group 4: TNFH Group 5: G Group 6: P Chronology: MNRLTSFHKIXPAVGE ch_aaR_sim: 20.8464 -------------------------------------------------------------------------- Min values: score = 99.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 312 archaeal, 2 bacterial, and 0 eukaryotic tDNAs found, i.e., 314 tDNAs in total. They are assigned to: V:7 M:3 I:46 L:5 F:3 A:44 T:13 P:3 E:17 D:0 K:54 N:1 Q:0 H:1 Y:0 G:27 S:20 R:66 W:0 O:0 C:0 X:4. They include 24 archaeal, 0 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 24 tDNAs in total. They are assigned to: V:0 M:0 I:24 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: MXE Group 2: FHTN Group 3: SL Group 4: IVKAR Group 5: G Group 6: P Chronology: MXFSRLHNTKIAVPGE ch_aaR_sim: 20.8366 -------------------------------------------------------------------------- Min values: score = 99.5000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 261 archaeal, 2 bacterial, and 0 eukaryotic tDNAs found, i.e., 263 tDNAs in total. They are assigned to: V:3 M:3 I:44 L:5 F:2 A:36 T:13 P:3 E:3 D:0 K:49 N:1 Q:0 H:1 Y:0 G:27 S:17 R:52 W:0 O:0 C:0 X:4. They include 23 archaeal, 0 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 23 tDNAs in total. They are assigned to: V:0 M:0 I:23 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. Group 1: MXE Group 2: SL Group 3: IARKV Group 4: HTNF Group 5: G Group 6: P Chronology: MXSRHLFNTKIAVPGE ch_aaR_sim: 20.8306 -------------------------------------------------------------------------- Min values: score = 100.0000 isoscore = 0.0000 isoscore_ac = 0.0000 Max values: score = 150.0000 isoscore = 150.0000 isoscore_ac = 150.0000 primary = true is not obligatory There are 219 archaeal, 1 bacterial, and 0 eukaryotic tDNAs found, i.e., 220 tDNAs in total. They are assigned to: V:2 M:0 I:44 L:1 F:2 A:35 T:11 P:3 E:3 D:0 K:47 N:1 Q:0 H:1 Y:0 G:15 S:13 R:38 W:0 O:0 C:0 X:4. They include 23 archaeal, 0 bacterial, and 0 eukaryotic tDNAs with non-standard assignments, i.e., 23 tDNAs in total. They are assigned to: V:0 M:0 I:23 L:0 F:0 A:0 T:0 P:0 E:0 D:0 K:0 N:0 Q:0 H:0 Y:0 G:0 S:0 R:0 W:0 O:0 C:0 X:0. fistAA is assigned to no tRNA genes. The computations are completed. tRNA genes are not assigned to a sufficient number of codons. The computations are completed. -------------------------------------------------------------------------- 1 function // 0=FindLUCA,1=FindScores,2=FindNonStartAAs,3=FindNonGlobAAs,4=GlobOptimizeGroups 0 FIRST_AA_IS_TESTED // 1=all AAs are tested at the 1st position, 0=>see the next row M firstAA // only when FIRST_AA_IS_TESTED = 0 ----------------------------------------------------------- 1 database // 0=Leipzig, 1=UCSC, 2=Poznan 1 ARCHAEA_ARE_INCLUDED 1 BACTERIA_ARE_INCLUDED 1 EUKARYOTES_ARE_INCLUDED 0 VIRUSES_ARE_INCLUDED // only for database = 0 0 ONLY_PARTICULAR_SPECIES_ARE_SELECTED 0 DOMAINS_ARE_WEIGHTED 16 min number of assignments 10 max number of non-starting AAs ----------------------------------------------------------- D acidType // R means tRNAs, D means tRNA genes (=tDNAs) 0 MODIFIED_NUCLEOTIDES // 1=are distinguished (only for tRNAs), 0=not, 2=combined 0 topology // 0 = periodic code 1 X_IS_INCLUDED // Ini 1 O_IS_INCLUDED // Sup 1 Z_IS_INCLUDED // Sec, i.e., selenocisteine 1 MX_MOVE_TOGETHER // 1=Met and fMet/Met-ini move together, 0=no 1 NONSTANDARD_ASSIGNMENTS // are 0=ignored or 1=processed according to amino acids 0 ISOACCEPTORS //1=similarities among isoacceptor tRNAs/tDNAs are also computed, 0=no 0 isoWeight // vs. alloacceptorWeight=1 // only when ISOACCEPTORS = 1 ----------------------------------------------------------- 4 numOfOptimizableGroups 1 groupWeight // vs. familyWeight=1 ----------------------------------------------------------- 2 numOfStableAAs G P stableAAs ----------------------------------------------------------- 0 numOfNonStartAAs nonStartAAs ----------------------------------------------------------- 1 ADAPTATION TO A GLOBAL STRUCTURE // 1 = yes, 0 = no 3 globStart // numbering starts from 1 5 globStop // numbering starts from 1 ----------------------------------------------------------- 0 numOfNonGlobAAs nonGlobAAs ----------------------------------------------------------- 0 included_parts // 0=Giege,1=E.coli,2=S.cerevisiae,3=blocks,4=custom 3 IE cutoff min // only when included_parts < 3 =0(all), =1(identity elements (IEs)), =3(effective IEs), =5(major IEs), =10(most MIEs) 0 aaRS_class // 0 = both, 1 = type I, 2 = type II ----------------------------------------------------------- 1 numOfGenAlgorithmRuns 2 NumOfMatingsAndMutations 16 numOfTrimmedClassifications 2 4 8 16 32 48 64 0 softwareBruteForce // 0 = basic level, 1,2 = more brute force 0 hardwareBruteForce // 0 = basic level, 1,2 = more brute force ----------------------------------------------------------- 1 SAVE_DATA // save x_tRNA.txt or x_tDNA.txt on a harddisk 0 PRINT_UNRECOMMENDED_DETAILS // if function < 4, the ouput files can get too long -----------------if-DOMAINS_ARE_WEIGHTED=1----------------- 1 archaealWeight 1 bacterialWeight 1 eukaryoticWeight 0 virusesWeight -----------------------if-function=0----------------------- 1 domainStep[0] // archaeal weight 1 domainStart[0] 3 domainStop[0] 1 domainStep[0] // bacterial weight 1 domainStart[0] 3 domainStop[0] 1 domainStep[0] // eukaryotic weight 1 domainStart[0] 3 domainStop[0] 1 domainStep[0] // viral weight 0 domainStart[0] 0 domainStop[0] ----------------------if-database=1------------------------ 1 ISOTYPE_MUST_BE_BEST_MODEL 0 primary ----------------if-database=1-&-function!=1---------------- 67 score cutoff min 150 score cutoff max 0 isoscore cutoff min 150 isoscore cutoff max 0 isoscore_ac cutoff min 150 isoscore_ac cutoff max ----------------if-database=1-&-function=1----------------- 0.5 scoreStep[0] // min score 40 scoreStart[0] 150 scoreStop[0] 1 scoreStep[1] // min isoscore 0 scoreStart[1] 0 scoreStop[1] 1 scoreStep[2] // min isoscore_ac 0 scoreStart[2] 0 scoreStop[2] 1 scoreStep[3] // max score 150 scoreStart[3] 150 scoreStop[3] 1 scoreStep[4] // max isoscore 150 scoreStart[4] 150 scoreStop[4] 1 scoreStep[5] // max isoscore_ac 150 scoreStart[5] 150 scoreStop[5] ---------------------included_parts=3---------------------- 1 IS_ACCEPTOR_STEM 3 IECutOffMin3[0] 1 IS_D-ARM 3 IECutOffMin3[1] 1 IS_ANTICODON_ARM 3 IECutOffMin3[2] 1 IS_VARIABLE_LOOP 3 IECutOffMin3[3] 1 IS_T-ARM 3 IECutOffMin3[4] 1 IS_8th_SITE 3 IECutOffMin3[5] 1 IS_9th_SITE 3 IECutOffMin3[6] 1 IS_26th_SITE 3 IECutOffMin3[7] 1 IS_73rd_SITE 3 IECutOffMin3[8] 1 IS_74th_SITE 3 IECutOffMin3[9] 1 IS_75th_SITE 3 IECutOffMin3[10] 1 IS_76th_SITE 3 IECutOffMin3[11] 1 IS_ANTICODON 1 IS_INTERSECTION_WITH_GIEGE 0 IS_INTERSECTION_WITH_E.COLI 0 IS_INTERSECTION_WITH_S.CEREVISIAE ---------------------included_parts=4---------------------- 11111111 Acceptor stem 5'->3' // 1 = included, 0 = excluded 11111111111 3'->5' 11111111111111111 D-arm 5'->3' 1111 3'->5' 1111111111111 Anticodon arm 5'->3' 111111 3'->5' 11111111111111 Variable loop 5'->3' 1111111111 3'->5' 111111111111 T-arm 5'->3' 11111 3'->5' ------------------------in-reality------------------------- Included sites of tDNAs (written only after the start of the program): Acceptor stem: 11111111 D-arm:11111111111111111 11111111111 1111 Anticodon arm:1111111111111 Variable loop:11111111111111 T-arm:111111111111 11111 1111111111 11111 ----------------------------------------------------------- THE SIMULATION HAS FINISHED. -----------------------------------------------------------